slurm.md

@@ -19,10 +19,11 @@ By default and for each Slurm job, a directory named `job.<job_id>` will be crea
 
 ## Slurm partitions
 
-There are two partitions on which you can submit jobs on atlas:
+There are 3 partitions on which you can submit jobs on atlas:
 
-* public: This partition allows to you access the 4 nodes. This is the default partition, that notably allows you to run MPI jobs ;
-* K80: This partition allows you to access the node on which the K80 GPGPU cards are installed.
+* `public`: This partition allows to you access the 5 nodes. This is the default partition, that notably allows you to run MPI jobs ;
+* `K80`: This partition allows you to access the node on which the K80 GPGPU cards are installed.
+* `nogpu`: This partition exclude `atlas4`. You should select it if you do not need GPU ressources.
 
 ## Interactive access to the nodes
 
@@ -46,7 +47,6 @@ To automatically allocate and connect, you can use
 ```bash
 salloc -t "03:00:00" -p public -J "jobname" --exclusive -N 1 srun --pty ${SHELL}
 ```
-> **INFO:** A wrapper for this interactive command will soon be available `compute`.
 
 > **IMPORTANT NOTE:** Please be reasonable with your use of the `--exclusive` and `-t "XX:YY:ZZ"`, as it could prevent other users to access the node. You can cancel a job with `scancel`.
 
@@ -88,10 +88,6 @@ Here is a basic slurm script to get you started:
 export FEELPP_SCRATCHDIR=/scratch/job.$SLURM_JOB_ID
 
 #################### OPTIONAL: 
-# In case you want to use modules.
-# You first have to activate the module command
-source /etc/profile.d/modules.sh
-
 # Source the configuration for Feel++ or your custom configuration
 PREVPATH=`pwd`
 cd /data/software/config/etc
@@ -101,13 +97,13 @@ cd ${PREVPATH}
 # Load modules here
 # This is an example of module to load
 module load gcc490.profile
-#################### OPTIONAL:
+####################
 
 # Finally launch the job
 # mpirun of openmpi is natively interfaced with Slurm
 # No need to precise the number of processors to use
 cd <appdir>
-mpirun --bind-to-core -x LD_LIBRARY_PATH <appname> --config-file <appcfg.cfg>
+mpirun --bind-to-core <appname> --config-file <appcfg.cfg>
 
 mkdir -p /data/<login>/slurm
 cp -r /scratch/job.$SLURM_JOB_ID /data/<login>/slurm